vmdmagazinedatabase
Differences
This shows you the differences between two versions of the page.
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vmdmagazinedatabase [2014/05/02 11:58] nuno [Intermolecular Forces] |
vmdmagazinedatabase [2017/06/30 11:58] (current) nuno [Transition States] |
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| {{gallery>software:vmdmagazine:active_site_tunnel?*&250x250&lightbox}} | {{gallery>software:vmdmagazine:active_site_tunnel?*&250x250&lightbox}} | ||
| - | //**Version:**// (2013/10/01) {{:software:vmdmagazine:active_site_tunnel:download:active_site_tunnel.zip| Version 1.0}} | + | //**Version:**// (2013/10/01) {{:software:vmdmagazine:download:active_site_tunnel.zip| Version 1.1}} |
| //**Languages: **// en, pt | //**Languages: **// en, pt | ||
| + | ---- | ||
| + | |||
| + | ====== pH indicators Molecules ====== | ||
| + | ### | ||
| + | A pH indicator is a halochromic chemical compound added in small amounts to a solution so the pH (acidity or basicity) of the solution can be determined visually | ||
| + | ### | ||
| + | ### | ||
| + | In this package are illustrated some molecules that behave as pH indicators. | ||
| + | ### | ||
| + | //**Screenshots**// | ||
| + | |||
| + | {{gallery>:software:vmdmagazine:phindicator?*&150x150&lightbox}} | ||
| + | |||
| + | //**Version:**// (2017/04/2) {{::software:vmdmagazine:download:ph_indicators.zip| Version 1.1}} | ||
| + | |||
| + | //**Languages: **// en | ||
| + | ---- | ||
| + | ====== Dyes ====== | ||
| + | ### | ||
| + | A dye is a colored substance that has an affinity to the substrate to which it is being applied. | ||
| + | ### | ||
| + | ### | ||
| + | In this package are illustrated some molecules that behave as dyes. | ||
| + | ### | ||
| + | //**Screenshots**// | ||
| + | {{gallery>:software:vmdmagazine:dyes?*&150x150&lightbox}} | ||
| + | |||
| + | |||
| + | //**Version:**// (2017/06/20) {{::software:vmdmagazine:download:dyes.zip|Version 1.1}} | ||
| + | |||
| + | //**Languages: **// en | ||
| + | ---- | ||
| + | ====== Protein Structure ====== | ||
| + | ### | ||
| + | Protein structure is the three-dimensional arrangement of atoms in a protein molecule. Proteins are polymers formed from sequences of amino acids, the monomers of the polymer. | ||
| + | The term structure when used in relation to proteins, takes on a much more complex meaning than it does for small molecules. Proteins are macromolecules and have four different levels of structure – primary, secondary, tertiary and quaternary. | ||
| + | |||
| + | ### | ||
| + | ### | ||
| + | In this package are illustrated some examples of the specific structures of proteins. | ||
| + | |||
| + | ### | ||
| + | //**Screenshots**// | ||
| + | {{gallery>:software:vmdmagazine:proteinstructure?*&150x150&lightbox}} | ||
| + | |||
| + | //**Version:**// (2016/12/20) {{::software:vmdmagazine:download:protein_structure.zip|Version 1.1}} | ||
| + | |||
| + | //**Languages: **// en | ||
| + | ---- | ||
| + | |||
| + | ====== Pharmaceutical Drugs ====== | ||
| + | ### | ||
| + | A pharmaceutical drug (also referred to as medicine, medication, or simply as drug) is a drug used to diagnose, cure, treat, or prevent disease. | ||
| + | |||
| + | ### | ||
| + | ### | ||
| + | In this package are illustrated some examples of molecules that are commercially available and are used clinically to create diseases. | ||
| + | |||
| + | ### | ||
| + | //**Screenshots**// | ||
| + | {{gallery>:software:vmdmagazine:pdrugs?*&150x150&lightbox}} | ||
| + | |||
| + | |||
| + | //**Version:**// (2017/03/2) {{::software:vmdmagazine:download:drugs.zip|Version 1.1}} | ||
| + | |||
| + | //**Languages: **// en | ||
| + | ---- | ||
| + | |||
| + | ====== Transition States ====== | ||
| + | ### | ||
| + | The transition state of a chemical reaction is a particular configuration along the reaction coordinate. It is defined as the state corresponding to the highest potential energy along this reaction coordinate. | ||
| + | |||
| + | ### | ||
| + | ### | ||
| + | In this package are illustrated some examples of transition states that were obtained from computational means. | ||
| + | |||
| + | ### | ||
| + | //**Screenshots**// | ||
| + | {{gallery>:software:vmdmagazine:ts?*&150x150&lightbox}} | ||
| + | |||
| + | |||
| + | //**Version:**// (2017/06/30) {{::software:vmdmagazine:download:transition_states.zip|Version 1.1}} | ||
| + | |||
| + | //**Languages: **// en | ||
| ---- | ---- | ||
vmdmagazinedatabase.1399028316.txt.gz · Last modified: 2014/05/02 11:58 by nuno
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